Okay so it looks like that GitHub's Wiki does not support using
means that all the links break. So for any files which are markdown they will
need to be corrected accordingly so that they are correct.
Okay, looks like directories are not supported at all, so I will need to map slashes to normal files.
Okay I think at this point, I am going to need a translator to process the files and that is going to be in Java code because it is too complex and limited in UNIX shell. It will be primitive but it should work.